Session info
R version 4.0.4 (2021-02-15)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19042)
Matrix products: default
locale:
[1] LC_COLLATE=Spanish_Spain.1252 LC_CTYPE=Spanish_Spain.1252
[3] LC_MONETARY=Spanish_Spain.1252 LC_NUMERIC=C
[5] LC_TIME=Spanish_Spain.1252
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] missMethyl_1.24.0
[2] IlluminaHumanMethylationEPICanno.ilm10b4.hg19_0.6.0
[3] IlluminaHumanMethylation450kanno.ilmn12.hg19_0.6.0
[4] minfi_1.36.0
[5] bumphunter_1.32.0
[6] locfit_1.5-9.4
[7] iterators_1.0.13
[8] foreach_1.5.1
[9] Biostrings_2.58.0
[10] XVector_0.30.0
[11] SummarizedExperiment_1.20.0
[12] MatrixGenerics_1.2.1
[13] matrixStats_0.58.0
[14] clusterProfiler_3.18.1
[15] org.Hs.eg.db_3.12.0
[16] ggnewscale_0.4.5
[17] enrichplot_1.10.2
[18] DOSE_3.16.0
[19] biomaRt_2.46.3
[20] gt_0.3.1
[21] TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
[22] GenomicFeatures_1.42.3
[23] AnnotationDbi_1.52.0
[24] Biobase_2.50.0
[25] GenomicRanges_1.42.0
[26] GenomeInfoDb_1.26.7
[27] IRanges_2.24.1
[28] S4Vectors_0.28.1
[29] BiocGenerics_0.36.0
[30] ggrepel_0.9.1
[31] patchwork_1.1.1
[32] forcats_0.5.1
[33] stringr_1.4.0
[34] dplyr_1.0.5
[35] purrr_0.3.4
[36] readr_1.4.0
[37] tidyr_1.2.0
[38] tibble_3.1.0
[39] ggplot2_3.3.3
[40] tidyverse_1.3.0
[41] magrittr_2.0.1
[42] dsOmicsClient_1.0.7-13
[43] DSLite_1.2.0
[44] dsBaseClient_6.1.1
[45] DSOpal_1.3.0
[46] opalr_3.0.0
[47] httr_1.4.2
[48] DSI_1.3.0
[49] R6_2.5.0
[50] progress_1.2.2
[51] BiocStyle_2.18.1
loaded via a namespace (and not attached):
[1] rappdirs_0.3.3 rtracklayer_1.49.5
[3] bit64_4.0.5 knitr_1.37
[5] multcomp_1.4-16 DelayedArray_0.16.3
[7] data.table_1.13.0 RCurl_1.98-1.3
[9] GEOquery_2.58.0 generics_0.1.0
[11] metap_1.4 preprocessCore_1.52.1
[13] cowplot_1.1.1 TH.data_1.0-10
[15] RSQLite_2.2.5 shadowtext_0.0.8
[17] bit_4.0.4 mutoss_0.1-12
[19] xml2_1.3.2 lubridate_1.7.10
[21] assertthat_0.2.1 viridis_0.5.1
[23] xfun_0.28 hms_1.0.0
[25] jquerylib_0.1.4 evaluate_0.14
[27] fansi_0.4.2 scrime_1.3.5
[29] dbplyr_2.1.1 readxl_1.3.1
[31] igraph_1.2.6 DBI_1.1.1
[33] tmvnsim_1.0-2 reshape_0.8.8
[35] ellipsis_0.3.1 backports_1.2.1
[37] bookdown_0.24 annotate_1.68.0
[39] sparseMatrixStats_1.2.1 vctrs_0.3.8
[41] cachem_1.0.4 withr_2.4.3
[43] ggforce_0.3.3 emo_0.0.0.9000
[45] GenomicAlignments_1.26.0 prettyunits_1.1.1
[47] mclust_5.4.7 mnormt_2.0.2
[49] crayon_1.4.1 genefilter_1.72.1
[51] pkgconfig_2.0.3 labeling_0.4.2
[53] tweenr_1.0.2 nlme_3.1-152
[55] rlang_0.4.10 lifecycle_1.0.0
[57] sandwich_3.0-0 downloader_0.4
[59] BiocFileCache_1.14.0 mathjaxr_1.4-0
[61] modelr_0.1.8 cellranger_1.1.0
[63] polyclip_1.10-0 rngtools_1.5
[65] base64_2.0 Matrix_1.3-2
[67] Rhdf5lib_1.12.1 zoo_1.8-9
[69] reprex_2.0.0 png_0.1-7
[71] viridisLite_0.3.0 bitops_1.0-6
[73] rhdf5filters_1.2.0 blob_1.2.1
[75] DelayedMatrixStats_1.12.3 doRNG_1.8.2
[77] qvalue_2.22.0 nor1mix_1.3-0
[79] scales_1.1.1 memoise_2.0.0
[81] plyr_1.8.6 zlibbioc_1.36.0
[83] compiler_4.0.4 scatterpie_0.1.6
[85] RColorBrewer_1.1-2 illuminaio_0.32.0
[87] plotrix_3.8-1 Rsamtools_2.6.0
[89] cli_2.4.0 MASS_7.3-53
[91] tidyselect_1.1.0 stringi_1.5.3
[93] highr_0.8 yaml_2.2.1
[95] GOSemSim_2.16.1 askpass_1.1
[97] grid_4.0.4 sass_0.4.0
[99] fastmatch_1.1-0 tools_4.0.4
[101] rstudioapi_0.13 gridExtra_2.3
[103] farver_2.1.0 ggraph_2.0.5
[105] digest_0.6.27 rvcheck_0.1.8
[107] BiocManager_1.30.12 quadprog_1.5-8
[109] Rcpp_1.0.7 siggenes_1.64.0
[111] broom_0.7.6 Rdpack_2.1.1
[113] colorspace_2.0-0 rvest_0.3.6
[115] XML_3.99-0.6 fs_1.5.0
[117] splines_4.0.4 statmod_1.4.35
[119] sn_2.0.0 graphlayouts_0.7.1
[121] multtest_2.46.0 xtable_1.8-4
[123] jsonlite_1.7.2 tidygraph_1.2.0
[125] TFisher_0.2.0 pillar_1.5.1
[127] htmltools_0.5.2 mime_0.10
[129] glue_1.4.2 fastmap_1.1.0
[131] BiocParallel_1.24.1 beanplot_1.2
[133] codetools_0.2-18 fgsea_1.16.0
[135] mvtnorm_1.1-1 utf8_1.2.1
[137] lattice_0.20-41 bslib_0.3.1
[139] numDeriv_2016.8-1.1 BiasedUrn_1.07
[141] curl_4.3 GO.db_3.12.1
[143] openssl_1.4.3 survival_3.2-7
[145] limma_3.46.0 rmarkdown_2.11
[147] munsell_0.5.0 DO.db_2.9
[149] rhdf5_2.34.0 GenomeInfoDbData_1.2.4
[151] HDF5Array_1.18.1 labelled_2.8.0
[153] haven_2.3.1 reshape2_1.4.4
[155] gtable_0.3.0 rbibutils_2.1