ShinyDataSHIELD User Guide
1
Overview
2
Setup
2.1
Install with Docker
3
Functionalities
3.1
Data entry
3.1.1
Single resource / table approach
3.1.2
Multiple resource study
3.1.3
Pooled data from the same server
3.1.4
Pooled data from different servers
3.1.5
Study server profiles
3.2
Table column types
3.3
Descriptive statistics
3.3.1
Summary
3.3.2
Scatter plot
3.3.3
Histogram
3.3.4
Heatmap
3.3.5
Boxplot
3.4
Statistical models
3.4.1
GLM models
3.4.2
Mixed models
3.4.3
Survival Analysis
3.5
Genomics
3.5.1
Analysis with BioConductor
3.5.2
Analysis with PLINK
3.6
Omics
3.6.1
LIMMA
3.6.2
DESeq
3.6.3
edgeR
4
Developers Guide
4.1
File structure of ShinyDataSHIELD
4.1.1
ui.R
4.1.2
server.R
4.1.3
Structure of the modules
4.1.4
How to add a new block
References
Published with bookdown
ShinyDataSHIELD User’s Guide
References