Function reference • methylclock

All functions

BMIQcalibration(): BMIQ normallization

checkClocks(): Check wheter input data contains the required CpGs for the implemented clocks.

checkClocksGA(): Check wheter input data contains the required CpGs for the implemented clocks for Gestational Age.

coefBlup: BLUP clock coefficients

coefEN: EN clock coefficients

coefEPIC: EPIC Gestational Age clock coefficients

coefHannum: Hannum clock coefficients

coefHorvath: Horvath clock coefficients

coefKnightGA: Knight Gestational Age clock coefficients

coefLeeGA: Lee Gestational Age clock coefficients

coefLevine: Levine clock coefficients

coefMayneGA: Mayne Gestational Age clock coefficients

coefNEOaPMA450K: NEOage PostMenstrual age Clock for 450K - Gestational Age clock coefficients

coefNEOaPMAEPIC: NEOage PostMenstrual age Clock for EPIC - Gestational Age clock coefficients

coefNEOaPMA450K: NEOage PostNatal age Clock for 450K - Gestational Age clock coefficients

coefNEOaPMAEPIC: NEOage PostNatal age Clock for EPIC - Gestational Age clock coefficients

coefPedBE: PedBE clock coefficients

coefSkin: Skin clock coefficients

coefTL: Telomere Length clock coefficients

cpgs.bn: BN clock CpGs

DNAmAge(): DNAm age estimation using different DNA methylation clocks.

DNAmGA(): Gestational DNAm age estimation using different DNA methylation clocks.

get.cell.type.reference(): Get cell type reference

meffil.estimate.cell.counts.from.betas(): Estimate cell counts for a beta matrix from a reference

meffil.list.cell.type.references(): List of available cell type references

MethylationDataExample55: MethylationDataExample55

methylclock: methylclock

plotCorClocks(): Plot correlation among DNAm clockx

plotDNAmAge(): Plot DNAm age estimation vs chronological age.

probeAnnotation21kdatMethUsed: probeAnnotation21kdatMethUsed

progress_data: progress_data

progress_vars: progress_vars

TestDataset: TestDataset