Check wheter input data contains the required CpGs for the implemented clocks for Gestational Age.

Usage

checkClocksGA(x, ...)

Arguments

x: data.frame or tibble (Individual in columns, CpGs in rows, CpG names in first colum - i.e. Horvath's format), ExpressionSet or GenomicRatioSet. A matrix is also possible having the CpG names in the rownames.
...: other parameters

Value

a list with the different GA clocks when there are more than 80

Details

To be supplied

Examples

checkClocksGA(TestDataset)
#> There are some clocks that cannot be computed since your data do not contain the required CpGs. 
#>         These are the total number of missing CpGs for each clock : 
#>  
#>    clock Cpgs_in_clock missing_CpGs percentage
#> 1 Knight           148            0        0.0
#> 2 Bohlin            96           87       90.6
#> 3  Mayne            62            0        0.0
#> 4    Lee          1125         1072       95.3
#> 5   EPIC           176          170       96.6