dsOmics

Introduction

Omics functions (server side) for DataSHIELD. These are server side functions for omics analysis of private data.

• The client side package is called dsOmicsClient:

  • https://github.com/isglobal-brge/dsOmicsClient

Installation

install.packages('devtools')

library(devtools)

devtools::install_github('isglobal-brge/dsOmics')

If you want to use a certain release then you can do the following

library(devtools)

devtools::install_github('isglobal-brge/dsOmics@v1.0.5')

• Install R Studio and the development environment as described below:

  • https://data2knowledge.atlassian.net/wiki/spaces/DSDEV/pages/12943461/Getting+started

• Then install the virtual machines as described below:

  • https://data2knowledge.atlassian.net/wiki/spaces/DSDEV/pages/931069953/Installation+Training+Hub-+DataSHIELD+v6

Usage:

• see vignettes

• https://htmlpreview.github.io/?https://github.com/isglobal-brge/dsOmicsClient/blob/master/vignettes/dsOmics.html

Acknowledgements

We acknowledge the help and support of Yannick Marcon and the DataSHIELD technical team.

Contact

• Juan R. Gonzalez, Xavier Escriba-Montagut and Yannick Marcon

• juanr.gonzalez@isglobal.org

• DataSHIELD

  • https://www.datashield.ac.uk