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Add a concept dictionary output to the plan

Source: R/plan.R
ds.omop.plan.concept_dictionary.Rd

Scans other outputs in the plan for concept IDs and produces a lookup table with concept names, domains, vocabulary IDs, and which outputs reference each concept. Useful for translating numeric concept IDs in other output tables into human-readable labels.

Usage

ds.omop.plan.concept_dictionary(
  plan,
  source_outputs = NULL,
  name = "concept_dictionary"
)

Arguments

plan

An omop_plan object.

source_outputs

Character vector; names of outputs to scan for concept IDs. If NULL (the default), all non-dictionary outputs in the plan are scanned.

name

Character; output name used as a key in the plan's outputs list.

Value

The modified omop_plan with the concept dictionary output appended.

See also

ds.omop.plan.options

Examples

if (FALSE) { # \dontrun{
plan <- ds.omop.plan()
plan <- ds.omop.plan.events(plan, "conditions", "condition_occurrence",
  concept_set = c(201826))
plan <- ds.omop.plan.concept_dictionary(plan)
} # }